cathparse(1)
NAME
cathparse - Generates DCF file from raw CATH files.
SYNOPSIS
- cathparse -listfile infile -domfile infile -namesfile infile
- -outfile outfile -logfile outfile
- cathparse -help
DESCRIPTION
cathparse is a command line program from EMBOSS ("the European
Molecular Biology Open Software Suite"). It is part of the
"Utils:Database creation" command group(s).
OPTIONS
- Input section
- -listfile infile
This option specifies the name of raw CATH classification file
(caths.list.vX.X) (input). The raw CATH parsable files
(classification and description files) available from
ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value:
caths.list.v2.4 - -domfile infile
This option specifies the name of raw CATH classification file
(domlist.vX.X) (input). The raw CATH parsable files (classification and description files) available from ftp.biochem.ucl.ac.uk
(/pub/cathdata/v2.4). Default value: domlist.v2.4 - -namesfile infile
This option specifies the name of raw CATH classification file
(CAT.names.all.vX.X) (input). The raw CATH parsable files
(classification and description files) available from
ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4). Default value:
CAT.names.all.v2.4 - Output section
- -outfile outfile
This option specifies the name of CATH DCF file (domain
classification file) (output). A Ždomain classification fileŽ
contains classification and other data for domains from SCOP or
CATH, in DCF format (EMBL-like). The files are generated by using
SCOPPARSE and CATHPARSE. Domain sequence information can be added
to the file by using DOMAINSEQS. Default value: Ecath.dat - -logfile outfile
This option specifies the name of the CATHPARSE log file. Default
value: cathparse.log
BUGS
Bugs can be reported to the Debian Bug Tracking system
(http://bugs.debian.org/emboss), or directly to the EMBOSS developers
(http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
cathparse is fully documented via the tfm(1) system.
AUTHOR
- Debian EMBOSS Packaging Team <pkg-emboss-devel@lists.alioth.debian.org>
- Wrote the script used to autogenerate this manual page.
COPYRIGHT
Copyright © 2007 Debian EMBOSS Packaging Team
- This manual page was autogenerated from an Ajax Control Definition of
the EMBOSS package. It can be redistributed under the same terms as
EMBOSS itself.