molphy utilities(1)
NAME
mollist - get identifiers list
molrev - reverse DNA sequences
molcat - concatenate sequences
molcut - get partial sequences
molmerge - merge sequences
nuc2ptn - DNA -> Amino acid
rminsdel - remove INS/DEL sites
molcodon - get specified codon sites
molinfo - get varied sites
mol2mol - MOLPHY format beautifer
int2mol - Interleaved -> MOLPHY
mol2int - MOLPHY -> Interleaved
mol2phy - MOLPHY -> Sequential
phy2mol - Sequential -> MOLPHY
must2mol - MUST -> MOLPHY
many more perl conversion utilities which are not further described
SYNOPSIS
MolPhy Utilities is a program package for MOLecular PHYlogenetics which includes several Perl utilities: mollist [sequence_file] molrev [sequence_file] molcat [sequence_file] molcut [sequence_file] molmerge [sequence_file] nuc2ptn [switches] [sequence_file] rminsdel [switches] [sequence_file] molcodon [sequence_file] molinfo [switches] [sequence_file] mol2mol [sequence_file] inl2mol [sequence_file] mol2int [sequence_file] mol2phy [sequence_file] phy2mol [sequence_file] must2mol [sequence_file] ali2mol [sequence_file] clus2mol [sequence_file] degene4l [switches] [sequence_file] degene4 [switches] [sequence_file] disjoint [sequence_file] dna2ami [options] [no_align_files] eali2mol [EMBL_ALIGN_file] egetcds [EMBL_file] getcds [EMBL_file] egetcds [Genbank_file] info2mol [sequence_file] infocode [switches] [sequence_file] infocode [switches] [sequence_file] mc2mol [sequence_file] mega2mol [sequence_file] mol2info [sequence_file] mol2seq [sequence_file] molcons [sequence_file] molsplit [sequence_file] njt2tpl [machine_readable_tree_with_branch_length] mol2mol [sequence_file] nuc2NUC [sequence_file] rmid3 [switches] [sequence_file] rmleu [switches] [sequence_file] rmsyno [switches] [sequence_file] seq2mol [sequence_file] seqwrap [file]
DESCRIPTION
This is the Debian GNU/Linux version of the MOLPHY (ProtML) distribution, version 2.3. Copyright (c) 1992-1996, Jun Adachi & Masami
Hasegawa. All rights reserved.
MOLPHY is a program package for MOLecular PHYlogenetics.
The perl utilities above are usefull to convert different formats of
phylogenetic data.
AUTHOR
- This manual page was written by Andreas Tille <tille@debian.org>, for
the Debian GNU/Linux system (but may be used by others).