SEQSPLIT(1)
NAME
seqsplit - split seqs into chunks of defined size and overlap
SYNOPSIS
seqsplit [-options] <seqfile>
DESCRIPTION
This manual page documents briefly the seqsplit command.
seqsplit is a program that splits sequences into smaller chunks of
defined size and overlap; output a FASTA file.
OPTIONS
-h Help; display usage and version.
- -o <file>
- Output the new FASTA file to <file>.
- --fragfile <f>
- Save one-line-per-frag coord summary file to <f>.
- --informat <s>
- Specify sequence file format <s>.
- --length <n>
- Set max length of each unique seq frag to <n>.
- --overlap <n>
- Set overlap length to <n> (total frag size = length+overlap).
- --shortnames
- Use short "frag1" names, not "<src>/<from>-<to>".
LIMITATIONS
Still working in 32 bits -- no sequence can be more than 2 GB in size.
SEE ALSO
afetch(1), alistat(1), compalign(1), compstruct(1), revcomp(1), seqstat(1), sfetch(1), shuffle(1), sindex(1), sreformat(1), stranslate(1),
weight(1).
AUTHOR
Sean Eddy
HHMI/Department of Genetics
Washington University School of Medicine
4444 Forest Park Blvd., Box 8510
St Louis, MO 63108 USA
Phone: 1-314-362-7666
FAX : 1-314-362-2157
Email: eddy@genetics.wustl.edu
- This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>,
for the Debian project (but may be used by others).