xrama(1)

NAME

xrama - shows animated Ramachandran plots

SYNOPSIS

xrama  -f  traj.xtc  -s  topol.tpr -[no]h -nice int -b time -e time -dt
time

DESCRIPTION

xrama shows a Ramachandran movie, that is, it shows the Phi/Psi angles as a function of time in an X-Window.

Static Phi/Psi plots for printing can be made with g_rama.

Some of the more common X command line options can be used:

-bg, -fg change colors, -font fontname, changes the font.

FILES

-f traj.xtc Input

Generic trajectory: xtc trr trj gro g96 pdb

-s topol.tpr Input

Generic run input: tpr tpb tpa xml

OTHER OPTIONS

-[no]h no

Print help info and quit

-nice int 0

Set the nicelevel

-b time 0

First frame (ps) to read from trajectory

-e time 0

Last frame (ps) to read from trajectory

-dt time 0

Only use frame when t MOD dt = first time (ps)

SEE ALSO

gromacs(7)

More information about the GROMACS suite is available in /usr/share/doc/gromacs or at <http://www.gromacs.org/>.

Mon 29 Aug 2005 xrama(1)