ALI2GFF(1)
NAME
ali2gff - Module to translate a MUMmer output files into gff formatted
output.
SYNOPSIS
ali2gff [-r] [-t <.|0|1|2>] [-x <name>] [-y <name>] [-H] [-f] [-h] <MUMmer_output_file>
OPTIONS
- -h, --help
- Show summary of options.
- -r Interchange the order of sequences (sequence 1 on y-axis,
- sequence 2 on x-axis).
- -t <.|0|1|2>
- Put label 'frame' in gff output.
- -x <name>
- Specify the species name for species1 (default: "Seq1").
- -y <name>
- Specify the species name for species2 (default: "Seq2").
- -i Ignore full sequence identities.
- -f Write output to file.
SEE ALSO
blat2gff(1), gff2aplot(1), parseblast(1), sim2gff(1).
AUTHOR
ali2gff was written by Steffi Gebauer-Jung.
- This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others).