ASN2FF(1)
NAME
asn2ff - convert ASN.1 biological data to a flat format (old version)
SYNOPSIS
asn2ff [-] [-A X] [-B X] [-C] [-G] [-L F] [-M] [-R] [-V F] [-a file- name] [-b] [-d] [-e] [-f b/p/e/s/x/z] [-g] [-h F] [-k F] [-l filename] [-m r/d/s/c/k/l/e/p] [-n F] [-o filename] [-p F] [-q] [-r filename] [-s] [-t] [-v F] [-w] [-y] [-z]
DESCRIPTION
asn2ff converts descriptions of biological sequences from NCBI's ASN.1 format to one of several flat-file formats. This program is built around a deprecated interface; please use asn2gb(1) instead.
OPTIONS
A summary of options is included below.
- Print usage message
-A X Show region starting at X (default is 0)
-B X Show region ending at X (default is last position)
-C Show Bankit comments
-G Output is one top bioseq only in genome view
-L F Use old (pre-Genbank 127.0) LOCUS line format
-M Output is map bioseqs only
-R For GenBank Release
-V F Don't use VERSION
- -a filename
- Filename for ASN.1 input (default is stdin)
- -b Input asnfile in binary mode
- -d Use SeqMgr indexing
- -e Input is a Seq-entry
- -f b/p/e/s/x/z
- Output Format:
b GenBank (default)
p GenPept
e EMBL
s PseudoEMBL
x GenBankSelect
z EMBLPEPT - -g Show gi numbers
- -h F Hide sequence
- -k F Don't use complex sets (phy-set,mut-set, pop-set)
- -l filename
- Log errors to filename
- -m r/d/s/c/k/l/e/p
- Output mode:
r release (default)
d dump
s Sequin
c Chromoscope
k dir-sub-debug
l dir-sub
e revise
p partial report - -n F Strict gene_binding
- -o filename
- Output Filename (default is stdout)
- -p F Omit new gene features
- -q Output is one top bioseq only
- -r filename
- Output error logfile (default is stderr)
- -s Input is a Seq-submit
- -t Show verbose message text
- -v F Suppress error messages
- -w Use HTML output format
- -y Print help format only
- -z New algorithm for orgnames
AUTHOR
The National Center for Biotechnology Information.