dcmmkdir(1)

NAME

dcmmkdir - Create a DICOMDIR file

SYNOPSIS

dcmmkdir [options] dcmfile-in...

DESCRIPTION

The dcmmkdir utility creates a DICOMDIR file from the specified referenced DICOM files according to the DICOM Part 11 Media Storage Application Profiles.

Currently the following profiles are supported (others might be added later):

o General Purpose CD-R Interchange (STD-GEN-CD) o General Purpose Interchange on DVD-RAM Media (STD-GEN-DVD-RAM) o General Purpose DVD with Compression Interchange (STD-GEN-DVD: JPEG/J2K)
o General Purpose MIME Interchange (STD-GEN-MIME) o General Purpose USB and Flash Memory with Compression Interchange: (STD-GEN-USB/MMC/CF/SD-JPEG/J2K)
o DVD Interchange with MPEG2 MP@ML (STD-DVD-MPEG2-MPML) o Basic Cardiac X-Ray Angiographic Studies on CD-R Media (STD-XABC-CD) o 1024 X-Ray Angiographic Studies on CD-R Media (STD-XA1K-CD) o 1024 X-Ray Angiographic Studies on DVD Media (STD-XA1K-DVD) o Dental Radiograph Interchange (STD-DEN-CD) o CT/MR Studies on various Media (STD-CTMR-xxxx) o Ultrasound Single Frame for Image Display (STD-US-ID-SF-xxxx) o Ultrasound Single Frame with Spatial Calibration (STD-US-SC-SF-xxxx) o Ultrasound Single Frame with Combined Calibration (STD-US-CC-SF-xxxx) o Ultrasound Single & Multi-Frame for Image Display (STD-US-ID-MF-xxxx) o Ultrasound Single & Multi-Frame with Spatial Calibration (STD-US-SC: MF-xxxx)
o Ultrasound Single & Multi-Frame with Combined Calibration (STD-US-CC: MF-xxxx)
o 12-lead ECG Interchange on Diskette (STD-WVFM-ECG-FD)
o Hemodynamic Waveform Interchange on Diskette (STD-WVFM-HD-FD)
This tool extends dcmgpdir which can only create General Purpose DICOMDIR files. The default behaviour of dcmmkdir (with --generalpurpose) is equivalent to that of dcmgpdir.

PARAMETERS

dcmfile-in referenced DICOM file

OPTIONS

general options: -h --help
print this help text and exit; --version
print version information and exit
-v --verbose: verbose mode, print processing details
-q --quiet: quiet mode, print no warnings and errors
-d --debug: debug mode, print debug information
input options: DICOMDIR identifiers:

+D --output-file [f]ilename : string
generate specific DICOMDIR file
(default: DICOMDIR in current directory)
+F --fileset-id [i]d : string (default: DCMTK_MEDIA_DEMO): use specific file set ID
+R --descriptor [f]ilename : string: add a file set descriptor file ID
(e.g. README, default: no descriptor)
+C --char-set [c]har-set : string: add a specific character set for descriptor
(default: "ISO_IR 100" if descriptor present)
type 1 attributes:: -I --strict
exit with error if DICOMDIR type 1 attributes
are missing in DICOM file (default)
+I --invent: invent DICOMDIR type 1 attributes
if missing in DICOM file
reading:: +id --input-directory [d]irectory : string
read referenced DICOM files from directory d
(default for --recurse: current directory)
-m --keep-filenames: expect filenames to be in DICOM format (default)
+m --map-filenames: map to DICOM filenames (lowercase->uppercase,
and remove trailing period)
-r --no-recurse: do not recurse within directories (default)
+r --recurse: recurse within filesystem directories
+p --pattern [p]attern : string (only with --recurse): pattern for filename matching (wildcards); # possibly not available on all systems
checking:: -W --no-consistency-check
do not check files for consistency
+W --warn-inconsist-files: warn about inconsistent files (default)
-a --abort-inconsist-file: abort on first inconsistent file
+Ipi --invent-patient-id: invent new PatientID in case of inconsistent
PatientsName attributes
-Nec --no-encoding-check: do not reject images with non-standard
pixel encoding (just warn)
-Nrc --no-resolution-check: do not reject images with non-standard
spatial resolution (just warn)
-Nxc --no-xfer-check: do not reject images with non-standard
transfer syntax (just warn)
icon images:: +X --add-icon-image
add monochrome icon image on IMAGE level
(default for cardiac profiles)
-Xs --icon-image-size [s]ize : integer (1..128): width and height of the icon image (in pixel)
(fixed: 128 for XA, 64 for CT/MR profile)
-Xi --icon-file-prefix [p]refix : string: use PGM image 'prefix'+'dcmfile-in' as icon
(default: create icon from DICOM image)
-Xd --default-icon [f]ilename : string: use specified PGM image if icon cannot be
created automatically (default: black image)
output options: profiles:

-Pgp --general-purpose
General Purpose Interchange on CD-R or
DVD-RAM Media (STD-GEN-CD/DVD-RAM, default)
-Pdv --general-purpose-dvd: General Purpose DVD with Compression Interchange
(STD-GEN-DVD-JPEG/J2K)
-Pmi --general-purpose-mime: General Purpose MIME Interchange (STD-GEN-MIME)
-Pfl --usb-and-flash: General Purpose USB/Flash Memory with Compression
Interchange (STD-GEN-USB/MMC/CF/SD-JPEG/J2K)
-Pmp --mpeg2-mpml-dvd: DVD Interchange with MPEG2 Main Profile @ Main
Level (STD-DVD-MPEG2-MPML)
-Pbc --basic-cardiac: Basic Cardiac X-Ray Angiographic Studies on
CD-R Media (STD-XABC-CD)
-Pxa --xray-angiographic: 1024 X-Ray Angiographic Studies on CD-R Media
(STD-XA1K-CD)
-Pxd --xray-angiographic-dvd: 1024 X-Ray Angiographic Studies on DVD Media
(STD-XA1K-DVD)
-Pde --dental-radiograph: Dental Radiograph Interchange (STD-DEN-CD)
-Pcm --ct-and-mr: CT/MR Studies (STD-CTMR-xxxx)
-Pus --ultrasound-id-sf: Ultrasound Single Frame for Image Display
(STD-US-ID-SF-xxxx)
--ultrasound-sc-sf: Ultrasound Single Frame with Spatial
Calibration (STD-US-SC-SF-xxxx)
--ultrasound-cc-sf: Ultrasound Single Frame with Combined
Calibration (STD-US-CC-SF-xxxx)
-Pum --ultrasound-id-mf: Ultrasound Single & Multi-Frame for Image
Display (STD-US-ID-MF-xxxx)
--ultrasound-sc-mf: Ultrasound Single & Multi-Frame with Spatial
Calibration (STD-UD-SC-MF-xxxx)
--ultrasound-cc-mf: Ultrasound Single & Multi-Frame with Combined
Calibration (STD-UD-CC-MF-xxxx)
-Pec --12-lead-ecg: 12-lead ECG Interchange on Diskette
(STD-WVFM-ECG-FD)
-Phd --hemodynamic-waveform: Hemodynamic Waveform Interchange on Diskette
(STD-WVFM-HD-FD)
writing:: -A --replace
replace existing DICOMDIR (default)
+A --append: append to existing DICOMDIR
-w --discard: do not write out DICOMDIR
-nb --no-backup: do not create a backup of existing DICOMDIR
post-1993 value representations:: +u --enable-new-vr
enable support for new VRs (UN/UT) (default)
-u --disable-new-vr: disable support for new VRs, convert to OB
group length encoding:: -g --group-length-remove
write without group length elements (default)
+g --group-length-create: write with group length elements
length encoding in sequences and items:: +e --length-explicit
write with explicit lengths (default)
-e --length-undefined: write with undefined lengths

NOTES

All files specified on the command line (or discovered by recursivly examining the contents of directories with the +r option) are first evaluated for their compatibility with the specified Media Storage Application Profile (Part 11). Only appropriate files encoded using one of the allowed Transfer Syntaxes will be accepted. Files having invalid filenames will be rejected (the rules can be relaxed via the +m option). Files missing required attributes will be rejected (the +I option can relax this behaviour).
A DICOMDIR file will only be constructed if all files have passed initial tests.
The support for icon images is currently restricted to monochrome images. This will probably change in the future. Till then color images are automatically converted to grayscale mode. The icon size is 128*128 pixels for the cardiac profiles (as required by the DICOM standard) and 64*64 for all others.

COMMAND LINE

All command line tools use the following notation for parameters: square brackets enclose optional values (0-1), three trailing dots indicate that multiple values are allowed (1-n), a combination of both means 0 to n values.
Command line options are distinguished from parameters by a leading '+' or '-' sign, respectively. Usually, order and position of command line options are arbitrary (i.e. they can appear anywhere). However, if options are mutually exclusive the rightmost appearance is used. This behaviour conforms to the standard evaluation rules of common Unix shells.
In addition, one or more command files can be specified using an '@' sign as a prefix to the filename (e.g. @command.txt). Such a command argument is replaced by the content of the corresponding text file (multiple whitespaces are treated as a single separator) prior to any further evaluation. Please note that a command file cannot contain another command file. This simple but effective approach allows to summarize common combinations of options/parameters and avoids longish and confusing command lines (an example is provided in file share/data/dumppat.txt).

ENVIRONMENT

The dcmmkdir utility will attempt to load DICOM data dictionaries specified in the DCMDICTPATH environment variable. By default, i.e. if the DCMDICTPATH environment variable is not set, the file <PREFIX>/lib/dicom.dic will be loaded unless the dictionary is built into the application (default for Windows).
The default behaviour should be preferred and the DCMDICTPATH environment variable only used when alternative data dictionaries are required. The DCMDICTPATH environment variable has the same format as the Unix shell PATH variable in that a colon (':') separates entries. The data dictionary code will attempt to load each file specified in the DCMDICTPATH environment variable. It is an error if no data dictionary can be loaded.

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