hmmconvert(1)
NAME
hmmconvert - convert profile file to a HMMER format
SYNOPSIS
hmmconvert [options] <hmmfile>
DESCRIPTION
The hmmconvert utility converts an input profile file to different
HMMER formats.
By default, the input profile can be in any HMMER format, including
old/obsolete formats from HMMER2, ASCII or binary; the output profile
is a current HMMER3 ASCII format.
OPTIONS
- -h Help; print a brief reminder of command line usage and all
- available options.
- -a Output profiles in ASCII text format. This is the default.
- -b Output profiles in binary format.
- -2 Output in legacy HMMER2 ASCII text format, in ls (glocal) mode.
- This allows HMMER3 models to be converted back to a close approximation of HMMER2, for comparative studies.
- --outfmt <s>
- Output in a HMMER3 ASCII text format other then the most current one. Valid choices for <s> are 3/b or 3/a. The current format is 3/b, and this is the default. There is a slightly different format 3/a that was used in some alpha test code.
SEE ALSO
See hmmer(1) for a master man page with a list of all the individual
man pages for programs in the HMMER package.
For complete documentation, see the user guide that came with your
HMMER distribution (Userguide.pdf); or see the HMMER web page
(@HMMER_URL@).
COPYRIGHT
@HMMER_COPYRIGHT@
p@HMMER_LICENSE@
For additional information on copyright and licensing, see the file
called COPYRIGHT in your HMMER source distribution, or see the HMMER
web page (@HMMER_URL@).
AUTHOR
Eddy/Rivas Laboratory
Janelia Farm Research Campus
19700 Helix Drive
Ashburn VA 20147 USA
http://eddylab.org
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