INSDSEQGET(1)
NAME
insdseqget - format sequences from GenBank as an XML INSDSet
SYNOPSIS
insdseqget [-] [-d filename] [-i filename] [-m n/p/b] [-n] [-o file- name] [-v]
DESCRIPTION
insdseqget retrieves biological sequence data from GenBank (according
to an input list of GI accession numbers) and prints it out as an XML
INSDSet document.
OPTIONS
A summary of options is included below.
- Print usage message
- -d filename
- Input file name for date list (desired accessions, one per line, followed by a blank line and a list of allowed dates, also one per line)
- -i filename
- Input file name for GI list (default = stdin)
- -m n/p/b
- Molecule type:
n Nucleotide (default)
p Protein
b Both - -n Return only new records (for which the given GI refers to an old
- version)
- -o filename
- Output file name for the XML INSDSet (default = stdout)
- -v Fetch SNP Variations
AUTHOR
The National Center for Biotechnology Information.