MINCPIK(1)
NAME
mincpik - generate images from minc files
SYNOPSIS
mincpik [options] <infile>.mnc [<image.type>]
DESCRIPTION
mincpik generates image files from MINC volumes using the Imagemagick
convert utility. For a complete list of output file types see the convert man pages.
Currently if there is a time dimension in the file the image will only
produced from the first time point
General options
- -verbose
- print out extra information
- -clobber
- overwrite the output file if it exists already
- -fake usually used in combination with -verbose to echo commands only
- -slice slice number to get (note this is in voxel co-ordinates)
- -scale scaling factor for resulting image, by default images are output
- at twice their original resolution
- -width autoscale the resulting image to have a fixed image width (in
- pixels)
- -depth bit-depth for resulting image 8 or 16 (MSB machines only)
- -title add a title to the resulting image, if just this option is spec
- ified the text used for the title is the name of the input image file. -title_text specify the title text to use. This option must be used in conjunction with -title
- Image range and lookup table options
- -range min max
- valid range of values to use from MINC file
- -image_range min max
- range of image values to use for pixel intensity
- -auto_range
- automatically determine image range using a 5 and 95% PcT. (histogram)
- -lookup arguments
- arguments to pass to minclookup
Slicing options
- -transverse
- get a transverse slice
- -axial synonym for transverse
- -coronal
- get a coronal slice
- -sagittal
- get a sagital slice
- -allthree
- this option is deprecated, use -triplanar instead
Triplanar options
- -triplanar
- create a triplanar view of the input MINC file
- -tilesize
- pixel size for each image in a triplanar
- -sagittal_offset
- offset the saggital slice from the centre in the triplanar
- -vertical
- create a vertical triplanar series of images (this is the default)
- -horizontal
- create a horizontal triplanar instead of a vertical one
Generic options for all commands:
-help Print summary of command-line options and abort.
AUTHOR
Andrew Janke - <a.janke@gmail.com>