VELVETH(1)
NAME
velveth - simple hashing program
DESCRIPTION
velveth - simple hashing program Version 1.0.02
OPTIONS
- -strand_specific
- : for strand specific transcriptome sequencing data (default: off)
- Output:
- directory/Roadmaps directory/Sequences
- [Both files are picked up by graph, so please leave them there]
- Version 1.0.02
- -strand_specific
- : for strand specific transcriptome sequencing data (default: off)
- Output:
- directory/Roadmaps directory/Sequences
- [Both files are picked up by graph, so please leave them there]
COPYRIGHT
Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)
This is free software; see the source for copying conditions. There is
NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.
Compilation settings: CATEGORIES = 2 MAXKMERLENGTH = 31
Usage: ./velveth directory hash_length {[-file_format][-read_type]
filename} [options]
- directory
- : directory name for output files
- hash_length
- : odd integer (if even, it will be decremented) <= 31 (if above, will be reduced)
- filename
- : path to sequence file or - for standard input
- File format options:
- -fasta
- -fastq
- -fasta.gz
- -fastq.gz
- -sam
- -bam
- -eland
- -gerald
- Read type options:
- -short
- -shortPaired
- -short2
- -shortPaired2
- -long
- -longPaired
- Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)
This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. - Compilation settings: CATEGORIES = 2 MAXKMERLENGTH = 31
- Usage: ./velveth directory hash_length {[-file_format][-read_type] filename} [options]
- directory
: directory name for output files
- hash_length
: odd integer (if even, it will be decremented) <= 31 (if above, will be reduced)
- filename
: path to sequence file or - for standard input
- File format options:
- -fasta
- -fastq
- -fasta.gz
- -fastq.gz
- -sam
- -bam
- -eland
- -gerald
- Read type options:
- -short
- -shortPaired
- -short2
- -shortPaired2
- -long
- -longPaired