SEQWORDS(1e)
NAME
seqwords - Generates DHF files from keyword search of UniProt.
SYNOPSIS
seqwords -keyfile infile -spfile infile -outfile outfile seqwords -help
DESCRIPTION
seqwords is a command line program from EMBOSS ("the European Molecular
Biology Open Software Suite"). It is part of the "Protein:3D Structure"
command group(s).
OPTIONS
- Input section
- -keyfile infile
This option specifies the name of keywords file (input). This
contains a list of keywords specific to a number of SCOP or CATH
families and superfamilies used by SEQWORDS to search a sequence
database. - -spfile infile
This option specifies the name of the sequence database (input) to search.
- Output section
- -outfile outfile
This option specifies the name of the DHF file (domain hits file)
(output). A 'domain hits file' contains database hits (sequences)
with domain classification information, in the DHF format
(FASTA-like). The hits are relatives to a SCOP or CATH family (or
other node in the structural hierarchies) and are found from a
search of a sequence database. Files containing hits retrieved by
PSIBLAST are generated by using SEQSEARCH, hits retrieved by a
sparse protein signatare by using SIGSCAN or various types of HMM
and profile by using LIBSCAN. Default value: test.hits
BUGS
Bugs can be reported to the Debian Bug Tracking system
(http://bugs.debian.org/emboss), or directly to the EMBOSS developers
(http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
seqwords is fully documented via the tfm(1) system.
AUTHOR
- Debian Med Packaging Team
<debian-med-packaging@lists.alioth.debian.org> - Wrote the script used to autogenerate this manual page.
COPYRIGHT
- This manual page was autogenerated from an Ajax Control Definition of
the EMBOSS package. It can be redistributed under the same terms as
EMBOSS itself.